Gary Ruvkun PhD.

InsR/IGF1R signalling and microRNAs in C. elegans development and longevity            

My lab investigates neuroendocrine control of C. elegans development, metabolism and longevity, as well as control of temporal pattern formation by heterochronic genes. We use a combination of genetic analysis and the resources of the now complete C. elegans genome sequence to discover genes in these pathways. These genetic screens have accelerated recently with the advent of feeding RNA inhibition genomic libraries that allow each of the 19,000 C. elegans genes to be tested for activity in the pathways we study. This allows instant molecular identification of genetic loci, bypass laborious positional cloning.

A C. elegans insulin signaling pathway that is homologous to mammalian insulin signaling regulates metabolism and longevity. Genomic analysis reveals 37 insulin-like genes. The insulin superfamily member most like human insulin acts in the pathway and human insulin can also interact. Longevity is regulated by insulin signaling within the nervous system, suggesting that it is the metabolism within particular neurons that are key to regulation of lifespan. We also study how these neuroendocrine pathways are coupled to sensory inputs. For example, the insulin pathway is coupled to a thermosensory pathway, allowing metabolism to be coupled to temperature. We are now exploring the neural signaling pathways that couple these systems. We are using powerful genetic selections to identify signaling molecules downstream of insulin-like receptors, as well as a novel insulin reception pathway that may act more broadly in animals.

Our studies of the C. elegans heterochronic pathway revealed two examples of small RNA duplexes that regulate the temporal axis of development. These 21 nucleotide RNAs base pair to target genes to down-regulate their activities, triggering developmental transitions. We are studying how these RNA duplexes regulate target gene activity, using genetics and biochemistry. We found that the larval stage specific regulatory RNA, let-7, is conserved across the animal kingdom, from flies to chordates to annelids to sea urchins, but not so far in jellyfish or plants or yeast. Remarkably, the zebrafish and Drosophila let-7 homologs are also temporally regulated, suggesting conservation of function. This is the first indication that regulatory RNAs may regulate temporal patterning in other animals species. This year we discovered that the molecular mechanisms by which these small RNAs regulate target genes is mechanistically related to RNA interference.

References:
  1. Samuelson, A. V. , Carr, C. E., and G. Ruvkun.   2007.   Gene activities that mediate increased lifespan of C. elegans insulin-like signaling mutants.    Genes and Development, Nov 15;21(22):2976-94. 

  2. Parry, D.H., Xu, J.  and G. Ruvkun.  2007. A whole-genome RNAi screen for C. elegans miRNA pathway genes.    Current Biology, Nov 13; [Epub ahead of print]

  3. 3.  Samuelson, A.V., R. R. Klimczak, D. Thompson, C. E. Carr, and G. Ruvkun
    2008   Identification of C. elegans genes regulating longevity using enhanced RNAi-sensitive strains.   Cold Spring Harbor Symp Quant Biol.; 73:.  Circadian Rhythms.

  4. Gabel, H. W.  and G. Ruvkun.  2008.  The exonuclease ERI-1 plays a conserved dual role in RNA interference and ribosomal 5.8S RNA processing.   Nature Structural Biology, in press.

  5. Patel D.S., Fang L.L., Svy D.K., Ruvkun G., Li W.  Genetic identification of HSD-1, a conserved steroidogenic enzyme that directs larval development in Caenorhabditis elegans.  Development. 2008 135:2239-49.

  6. Ruvkun, G.   Tiny RNA: Where do we come from? What are we? Where are we going?  2008. Trends Plant Sci. 2008 Jul;13(7):313-6. Epub 2008 Jun 16.

  7. Fischer, S.E.J., M. D. Butler, Q. Pan and G. Ruvkun..  Trans-splicing in C. elegans generates the negative RNAi regulator ERI-6/7.  Nature. 2008 Sep 25;455(7212):491-6. Epub 2008 Sep 10.

  8. Wang, M. C., E. O’Rourke and G. Ruvkun.  Germline Stem Cell regulation of C. elegans fat storage and longevity. Science. 2008 Nov 7;322(5903):957-60.

  9. Isenbarger, T.A, C. E. Carr, S. S. Johnson, M. Finney, G. M. Church, W. Gilbert, M. T. Zuber, and G. Ruvkun.  2008.  The most conserved genome segments for life detection on Earth and other planets. Orig Life Evol Biosph. 2008 Dec;38(6):517-33. Epub 2008 Oct 14

  10. Soukas, A. A., E. A. Kane, C. E. Carr, J. A. Melo, and G. Ruvkun.   2009.   Rictor/TORC2 regulates fat metabolism, feeding, growth, and lifespan in Caenorhabditis elegans. Genes Dev. 2009 Feb 15;23(4):496-511. PMCID:  PMC2648650
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